CISBIO Software Resources
A wide range of bioinformatics software and databases is available from the . CISBIO has developed various pieces of software to facilitate its research into systems biology and bioinformatics. Some of these items are listed below:
CISBIO Software Resources
- Proteomics Tools
- Microarray Data Analysis Tools
- Data Management Software
- Commercial Imaging Software bought with CISBIC funding
- Commercial Data Analysis Software supported by the Bioinformatics Data Science Group
- Genome Visualisation
- Theoretical Systems Biology Tools
- Phylogenetric software
- Ethomics and sleep
- – Protein structure prediction server
- – Prediction of variant phenotype
- Alignment of interactomes
- Protein Function Prediction
- an automated method for the prediction of ligand binding sites
- Global and Restrained Docking Exploration Nexus
- - a tool to predict alternative splicing from Exon array data more accurately ()
- BSS Software Resources
Commercial Imaging Software bought with CISBIC funding (contact film-service@imperial.ac.uk)
- for image acquisition and analysis
- for deconvolution
- for advanced image analysis
Commercial Data Analysis Software supported by the .
Genome Visualisation (contact Derek Huntley)
- ()
: Statistical Exploration of Landscapes of Phylogenetic Trees. Tools for the exploration of distributions of phylogenetic trees.
(with Xavier Didelot, hosted on his github): Reconstruction of transmission trees using genomic data.
(on github): Label and compare topologies of (for now binary) rooted trees.
(with Don Klinkenburg in Holland, and Xavier Didelot ): Analysis of Outbreaks with Sequence Data. Implementation the outbreak analysis method described by Klinkenberg et al (2016)
: a multi-platform software for sleep/activity analysis in Drosophila. pySolo aims at improving sharing – and communication – among researchers in the field ofsleep in invertebrates. Works with TriKinetics software.
: The ethoscope platform is a collection of interconnected tools allowing biologists to design experiments, acquire and analyse a large amount of behavioural data. Provides a hardware and software solution.
: R package to study data from high-throughput animal behaviour monitoring
